Tutorials

• Quickstart
  • Installation
  • Recalibrate Reads
  • Benchmark Quality Scores
  • Plotting Benchmarked Scores
• Installation
  • Virtual Environments
  • Creating a Virtual Environment with pipenv
  • Creating a Virtual Environment with conda
  • Creating a Virtual Environment with venv
  • Testing that installation was successful
• Example Recalibration Workflow
  • Software Requirements
  • Downloading the Data
  • Recalibrating a BAM file
  • Correcting Reads
  • Calibrating FASTQ Reads
  • Benchmarking Calibration
  • Plotting the Benchmark